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Biomolecules · Bioelements and biomolecules

Bioelements and inorganic biomolecules

Only about twenty elements of the periodic table are part of living matter, and four of them (C, H, O, N) make up more than 95% of the mass of any living organism. This page explains why life is built from so few elements, and how water and mineral salts, which contain little or no carbon, are essential for life.

Bioelements: CHNOPS and the rest

Imagine your biology class burns a sample of dried spinach in a lab. Almost all of its mass disappears as gases, leaving only a tiny amount of inorganic ash. Which elements made up the part that burned away, and which make up the ash that remained?

Horizontal bar diagram comparing the relative abundance in living matter of primary bioelements, secondary bioelements and trace elements: the box for the primary ones is the widest and the box for the trace elements is the narrowest. relative abundance in living matter (not to scale) CHNOPS: C, H, O, N, P, S (> 95%) Ca, Na, K, Cl, Mg 0.1% – 2% < 0.1% trace elements: Fe, Zn, Cu, I… the width of each box does not represent its importance, only its quantity
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Explain the difference between primary bioelements, secondary bioelements, and trace elements, and give a specific example of each of the three groups.

Explain the difference between primary bioelements, secondary bioelements, and trace elements, and give a specific example of each of the three groups.

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Look at the bar chart showing the abundance of the main bioelements in living matter. State which group of bioelements the four most abundant elements belong to,…

Look at the bar chart showing the abundance of the main bioelements in living matter. State which group of bioelements the four most abundant elements belong to, approximately what percentage of living matter they represent as a whole, and why they are considered essential for forming biomolecules.

O C H N Ca P Fe, Zn, Cu… 62 % 20 % 10 % 3 % 2 % 1 % < 1 % primary secondary trace elements

You can do it on paper and send a photo with your answer.

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The elemental composition (% dry mass) of two unknown samples is analysed in the laboratory: Sample 1: Oxygen 62.4%, Carbon 19.8%, Hydrogen 9.5%, Nitrogen 3.1%, Calcium…

The elemental composition (% dry mass) of two unknown samples is analysed in the laboratory:

  • Sample 1: Oxygen 62.4%, Carbon 19.8%, Hydrogen 9.5%, Nitrogen 3.1%, Calcium 1.4%, Iron 0.005%, Zinc 0.003%.

  • Sample 2: Oxygen 46.6%, Silicon 27.7%, Aluminum 8.1%, Iron 5.0%, Calcium 3.6%, Carbon 0.03%.

  1. a) Reasonably deduce which of the samples comes from living matter and which from the Earth's crust, justifying your choice based on the physicochemical properties of carbon that make it more suitable than silicon for forming biomolecules.
  2. b) From the data of the biological sample, classify its elements into primary, secondary, and trace elements according to their relative abundance.
  3. c) Justify why a trace element like zinc is just as essential for maintaining cellular life as carbon, despite being present in a proportion thousands of times lower.
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In an experimental hydroponic culture, the effect of bioelement deficiency on tomato seedlings is studied. Batch 1 grows in a medium lacking nitrogen and batch 2 in a…

In an experimental hydroponic culture, the effect of bioelement deficiency on tomato seedlings is studied. Batch 1 grows in a medium lacking nitrogen and batch 2 in a medium lacking iron. After two weeks, both batches suffer severe chlorosis and growth arrest. A student claims that the consequences in batch 2 should be insignificant compared to batch 1, arguing that nitrogen accounts for around 3% of the dry mass of the plant (primary bioelement), while iron accounts for less than 0.01% (trace element).

  1. a) Refute the student's argument by explaining the fundamental difference between the biological role of primary bioelements and that of trace elements.
  2. b) Justify at a biochemical level why the deficiency of such a minuscule amount of iron blocks chlorophyll synthesis and photosynthesis with a severity comparable to the lack of nitrogen.
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Water: a polar molecule held together by hydrogen bonds

Water molecule with bent geometry: the oxygen (δ⁻) joined by covalent bonds to two hydrogens (δ⁺) at an angle of about 104.5° and the resulting electric dipole. angle ≈ 104.5° O (δ⁻) H (δ⁺) H (δ⁺) electric dipole Bent water molecule in the center, joined by four hydrogen bonds to four neighboring molecules: its two δ⁺ hydrogens attract the δ⁻ oxygen of two neighbors and its δ⁻ oxygen attracts a δ⁺ hydrogen from each of the other two. Each water molecule can form up to 4 hydrogen bonds O O O O O H H H H H H H H H H δ⁻ δ⁻ δ⁻ δ⁺ δ⁺ δ⁺ δ⁺ hydrogen bond (between molecules) O–H covalent bond (within the molecule)
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State two functions of water in living organisms that are a direct consequence of its polarity, and briefly explain each of them.

State two functions of water in living organisms that are a direct consequence of its polarity, and briefly explain each of them.

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Unlike almost all liquids, whose density increases continuously as they cool until solidifying, water reaches its maximum density at 4 °C (1.000 g/cm³) and decreases to…

Unlike almost all liquids, whose density increases continuously as they cool until solidifying, water reaches its maximum density at 4 °C (1.000 g/cm³) and decreases to 0.917 g/cm³ when freezing at 0 °C.

  1. a) Explain the molecular cause of this thermal anomaly of water, describing how hydrogen bonds are reorganized in the transition from liquid water to ice.
  2. b) Imagine a hypothetical scenario in which water did not present this anomaly and ice were denser than liquid water. Reasonably predict the thermal and physical evolution that a 20 m deep mountain lake would undergo during a winter with temperatures of -10 °C, and justify how it would affect the survival of benthic and nektonic aquatic organisms.
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Properties of water and its biological functions

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Relate the high specific heat capacity of water to thermoregulation in organisms and give an example showing this function in a specific living organism.

Relate the high specific heat capacity of water to thermoregulation in organisms and give an example showing this function in a specific living organism.

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To connect the heat idea to a living organism: a dog pants and a person sweats, and both lose body heat as water evaporates. In a hot Arizona summer, that evaporative cooling keeps body temperature near 37 °C.

Mineral salts: dissolved and precipitated

Comparison between dissolved mineral salts, with free Na⁺, K⁺, Cl⁻ and Ca²⁺ ions in the water surrounded by a hydration shell, and precipitated salts, which form a solid, insoluble crystal lattice of calcium ions and anions such as phosphate or carbonate, typical of bone or shell. dissolved precipitated H₂O Na⁺ Cl⁻ K⁺ Ca²⁺ hydration shell Ca²⁺ PO₄³⁻ or CO₃²⁻ insoluble solid crystal mobile ions in the water (body fluids) support and protection (bone, shell)
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A cell accumulates $\text{K}^+$ ions inside itself and maintains $\text{Na}^+$ ions on the outside. Explain what form these mineral salts are in within the cellular…

A cell accumulates $\text{K}^+$ ions inside itself and maintains $\text{Na}^+$ ions on the outside. Explain what form these mineral salts are in within the cellular medium (dissolved or precipitated) and name two functions they can perform.

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The human skeleton contains calcium salts in precipitated form. Name a specific mineral salt that forms it and explain what advantage is gained by it being precipitated…

The human skeleton contains calcium salts in precipitated form. Name a specific mineral salt that forms it and explain what advantage is gained by it being precipitated rather than dissolved.

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Buffer systems and pH stability

If you pour one milliliter of hydrochloric acid into a liter of pure water, the pH plummets from 7 to 3; if you add that same amount to blood plasma, the pH barely changes by a few thousandths: how do biological fluids manage to avoid drastic changes in acidity?

A buffer combines a species able to take up H⁺ with its protonated form, which can release them. It cushions changes in pH, but its capacity is limited. The bicarbonate system in the extracellular medium and the phosphate system in the intracellular medium stand out.

$$\mathrm{H_2PO_4^-\rightleftharpoons H^++HPO_4^{2-}}$$ A phosphate buffer: faced with an excess of H⁺ the base HPO₄²⁻ takes up a proton and becomes H₂PO₄⁻; if H⁺ is lacking, H₂PO₄⁻ releases a proton and returns to HPO₄²⁻. Excess H⁺: the base takes them up H+ + HPO42− base H H2PO4− acid H⁺ lacking: the acid form releases them H H2PO4− acid HPO42− base + H+

Back to the start: Chemical selection favored C, H, O and N because they are small atoms with incomplete outer shells, which allows them to share electrons and form stable and varied covalent bonds, ideal for building complex biomolecules.

Summary

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