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Biology · Biology
The cell and its cycle · The cell and its organisation

Observing the cell

The discovery of the cell has always depended on the quality of the instrument used to look at it. In your school lab, you might see onion skin or a drop of pond water through a compound light microscope, but a ribosome stays out of sight. The better the microscope, the more internal structures can be distinguished; and the better the sample is prepared, the more faithfully what we see reflects what really happens inside the living cell.

Light and electron microscopy

When we look at a drop of stagnant water we can see paramecia swimming about, but if we try to focus on their membrane or their internal organelles, the image shows nothing more than a transparent mass with no detail: what differences between light and beams of electrons explain why we need two such different types of microscope?

Cross-section comparison of a light microscope, where visible light from a lamp passes through a living sample and is focused with glass lenses to the eye, and a transmission electron microscope, where an electron beam travels down a column in a vacuum, passes through a dead, dehydrated sample and is focused with electromagnetic lenses onto a fluorescent screen. Light microscope (LM) Electron microscope (EM) transmission (TEM) eye eyepiece lens objective lens living sample (slide) condenser lamp (visible light) electron gun condenser lens dead sample and dehydrated objective lens projector lens vacuum column fluorescent screen visible light · glass lenses allows living cells to be observed electron beam · vacuum electromagnetic lenses (coils)
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Distinguish between light microscopy and electron microscopy: what each uses to "illuminate" the sample, what type of structures each technique allows us to observe, and…

Distinguish between light microscopy and electron microscopy: what each uses to "illuminate" the sample, what type of structures each technique allows us to observe, and whether it is possible to observe living cells with them.

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You have an aqueous suspension containing an unknown mixture of four biological components: influenza virus particles (~100 nm), Escherichia coli* cells (~2 µm), human…

You have an aqueous suspension containing an unknown mixture of four biological components: influenza virus particles (~100 nm), Escherichia coli cells (~2 µm), human erythrocytes (~7.5 µm), and purified ribosomes (~25 nm). In the laboratory, you have membrane filters with pore sizes of 0.22 µm and 5 µm, an optical microscope (resolution limit: 0.2 µm), and a transmission electron microscope.

Design a two-phase analytical procedure (separation by sequential filtration and microscopic inspection) that allows you to separate and unequivocally identify each of the four components. Justify in which fraction (retentate or filtrate) each component will remain at each step, and explain which specific microscopic instrument is essential to confirm the presence and morphology of each one, deducing why the optical microscope is useless for two of them.

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A research team wants to check whether bacteria in a sample are infected by bacteriophages. Design the study: choose the appropriate microscopy technique, justify the…

A research team wants to check whether bacteria in a sample are infected by bacteriophages. Design the study: choose the appropriate microscopy technique, justify the choice over alternatives, and describe what the team would expect to observe if infection were occurring.

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The light microscope and its magnification

When you look at an onion slide in Biology lab using different pairs of lenses, the size at which you see the cells changes dramatically: in what way do the objective and eyepiece lenses together determine the final size at which you observe the sample?

Side view of a light microscope with eyepiece, nosepiece with objectives, stage, focus knobs and light source; the objective forms a magnified real image inside the tube and the eyepiece magnifies it again, so that a 10× eyepiece with a 100× objective gives a total magnification of 1000×. eyepiece real image nosepiece objective stage light source knobs coarse and fine eyepiece 10× × objective 100× = 1000× total magnification
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Name the basic parts of a light microscope (eyepiece, objective lenses, stage, coarse and fine focus knobs, and light source) and state the function of each.

Name the basic parts of a light microscope (eyepiece, objective lenses, stage, coarse and fine focus knobs, and light source) and state the function of each.

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Explain the difference between magnification and resolving power of a microscope and explain why greatly magnifying an image without improving resolution (so-called…

Explain the difference between magnification and resolving power of a microscope and explain why greatly magnifying an image without improving resolution (so-called "empty magnification") does not allow further details to be distinguished.

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Resolution

When you digitally enlarge a low-quality photograph on a screen, the image becomes huge but the details do not increase and everything turns blurry: why is the magnification of a microscope of no use if it does not improve the minimum distance at which it can distinguish two nearby points?

Comparative resolution scale contrasting the limits of the human eye (0.1 mm), the light microscope (200 nm) and the transmission electron microscope (0.2 nm) with the sizes of cells, bacteria, viruses and molecules. TEM · from 0.2 nm LM · from 200 nm eye · from 0.1 mm atom protein ribosome virus bacterium eukaryotic cell frog egg 0.1 nm1 nm10 nm 100 nm1 µm10 µm 100 µm1 mm logarithmic scale
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The diagram shows a scale of sizes with the resolution limits of the human eye, the light microscope (LM) and the transmission electron microscope (TEM). State which…

The diagram shows a scale of sizes with the resolution limits of the human eye, the light microscope (LM) and the transmission electron microscope (TEM). State which instrument you would need to observe in detail: a) a flu virus; b) a bacterium; c) a ribosome; d) a skin cell. Justify each choice based on the diagram.

TEM · from 0.2 nm LM · from 200 nm Eye · from 0.1 mm Atom Protein Ribosome Virus Bacterium Eukaryotic cell Frog egg 0.1 nm 1 nm 10 nm 100 nm 1 µm 10 µm 100 µm 1 mm Logarithmic scale
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The electron microscope reveals organelles and viruses that the light microscope cannot show. Explain which property of the electron beam gives it a higher resolving…

The electron microscope reveals organelles and viruses that the light microscope cannot show. Explain which property of the electron beam gives it a higher resolving power and point out two practical limitations of electron microscopy compared to light microscopy.

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Preparing the sample

Comparative diagram of sample preparation: in light microscopy, thin section and staining; in electron microscopy, fixing, dehydration, embedding in resin, ultrathin sectioning and contrasting with heavy metals. light microscopy thin section + staining electron microscopy fixing dehydration embedding in resin ultrathin sectioning contrasting with heavy metals
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Most biological samples are stained before being observed under a light microscope. Explain two reasons for staining a sample and name a stain frequently used in school…

Most biological samples are stained before being observed under a light microscope. Explain two reasons for staining a sample and name a stain frequently used in school labs.

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Summary

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