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Our Chemical Environment and Pharmaceuticals · Natural products and pharmaceuticals

Drugs from natural sources

Walk along almost any Irish river and you will pass willow trees. Two thousand years before anyone had heard of a Leaving Cert, people chewed willow bark to ease aches and fevers. Today the same chemistry sits in the tablet you take for a headache. How did a chemical from a tree become a tablet, and why did chemists change it along the way?

Natural products and the drugs they gave us

A natural product is a chemical compound made by a living organism, such as a plant, a mould, a bacterium or a marine animal. Many natural products have a biological effect on the human body. A drug is a substance that changes how the body works. A medicine is a drug used to prevent, treat or cure disease.

Plants cannot run away from predators or germs, so many of them make chemicals that defend them. Some of these chemicals also work on human cells. That is why plants have been a rich source of medicines.

Natural source Active compound Medical use
Willow bark (Salix) salicin, which the body converts to salicylic acid. Aspirin was developed from it. pain relief, reducing fever and inflammation
Cinchona bark (South American tree) quinine treating malaria
Opium poppy morphine strong painkiller for severe pain
Penicillium mould penicillin antibiotic for bacterial infections
Pacific yew bark taxol (paclitaxel) cancer chemotherapy
Practice★☆☆Not started
Many medicines originated as natural products. a) Match each plant to the compound or drug derived from it: willow bark, cinchona bark, opium poppy. Options: morphine,…

Many medicines originated as natural products.

  1. a) Match each plant to the compound or drug derived from it: willow bark, cinchona bark, opium poppy. Options: morphine, quinine, salicin (precursor of aspirin).
  2. b) State the medical use of each of the three.
  3. c) Explain what is meant by a natural product.
Solve

Aspirin: from willow bark to tablet

Willow bark contains salicin. In the body, salicin is converted to salicylic acid, which relieves pain and reduces fever. The problem is that salicylic acid irritates the lining of the mouth and stomach. In 1897 chemists at the company Bayer made a modified version, acetylsalicylic acid, which is much better tolerated. We call it aspirin.

Structure of aspirin: a benzene ring carrying a carboxylic acid group and an ester group on neighbouring carbon atoms O OH O O CH₃ carboxylicacid ester

The change is small: the phenolic –OH group of salicylic acid has become an ester group, and the –COOH group is unchanged. Aspirin therefore contains two functional groups from the families you know: a carboxylic acid (–COOH) and an ester (–COO–).

Making aspirin in the laboratory

Aspirin is made by reacting salicylic acid with ethanoic anhydride. This is an esterification, a preparation of an ester (LO 4.2.8), and it is an example of an organic compound used in a pharmaceutical product (LO 4.2.15). A few drops of concentrated phosphoric (or sulfuric) acid act as a catalyst, and the mixture is warmed gently (heated under reflux in some versions of the experiment, so that no vapour escapes). The –OH group of salicylic acid is converted to an ester, and ethanoic acid is the by-product.

$$\text{salicylic acid} + \text{ethanoic anhydride} \rightarrow \text{aspirin} + \text{ethanoic acid}$$

Salicylic acid and ethanoic anhydride react in a 1:1 mole ratio, and aspirin is formed in a 1:1 ratio with the salicylic acid used. Water is then added to destroy any leftover ethanoic anhydride and to make the aspirin crystallise.

What aspirin does, and what happens to it in the body

Aspirin is an analgesic (it relieves pain), an antipyretic (it reduces fever) and an anti-inflammatory. In low doses it also makes blood less likely to clot, so it is used to reduce the risk of heart attack and stroke.

In the body, the ester group of aspirin is hydrolysed: it reacts with water to give salicylic acid and ethanoic acid.

$$\text{CH}_3\text{COO-C}_6\text{H}_4\text{-COOH} + \text{H}_2\text{O} \rightarrow \text{HO-C}_6\text{H}_4\text{-COOH} + \text{CH}_3\text{COOH}$$

Aspirin is therefore a modified form of salicylic acid. It passes through the mouth and stomach with the –OH group masked as an ester, and the active salicylic acid is released later, mainly in the blood and liver by enzymes (esterases).

Percentage yield

No reaction gives exactly the mass you calculate. The percentage yield compares what you actually get with the maximum possible:

$$\text{percentage yield} = \frac{\text{actual yield}}{\text{theoretical yield}} \times 100$$

The theoretical yield is the mass of product you would get if all the limiting reagent was converted.

A yield below $100\%$ has several possible causes:

  • the reaction may not go to completion

  • some product stays dissolved in the solution

  • some product is left on the glassware or the filter paper

  • side reactions take place

  • some product is lost when the crystals are washed

Practice★☆☆Not started
Aspirin is acetylsalicylic acid. a) Name the functional groups in aspirin that come from the carboxylic acid and ester families. b) Name the two reactants used in the…

Aspirin is acetylsalicylic acid.

  1. a) Name the functional groups in aspirin that come from the carboxylic acid and ester families.
  2. b) Name the two reactants used in the laboratory synthesis of aspirin from salicylic acid.
  3. c) State two medical uses of aspirin.
Solve
Practice★★☆Not started
Aspirin ($M_r = 180$) is made from salicylic acid ($M_r = 138$) and ethanoic anhydride ($M_r = 102$) in a 1:1 molar ratio. In a school laboratory $5.00\,\text{g}$ of…

Aspirin ($M_r = 180$) is made from salicylic acid ($M_r = 138$) and ethanoic anhydride ($M_r = 102$) in a 1:1 molar ratio. In a school laboratory $5.00\,\text{g}$ of salicylic acid is reacted with excess ethanoic anhydride and $4.80\,\text{g}$ of aspirin is obtained.

  1. a) Calculate the amount of salicylic acid used, in mol.
  2. b) Calculate the theoretical yield of aspirin, in g.
  3. c) Calculate the percentage yield.
  4. d) Suggest two reasons why the yield is less than $100\%$.
Solve
Practice★★☆Not started
Salicylic acid from willow bark irritates the stomach, so it was chemically modified to aspirin. a) Explain why the modification reduced the irritation. b) Write the…

Salicylic acid from willow bark irritates the stomach, so it was chemically modified to aspirin.

  1. a) Explain why the modification reduced the irritation.
  2. b) Write the equation for the hydrolysis of aspirin in the body to salicylic acid and ethanoic acid, using structural formulas for the organic species.
  3. c) A standard aspirin tablet contains $300\,\text{mg}$ of acetylsalicylic acid. Calculate the amount in mol in one tablet.
  4. d) A low-dose tablet contains $75\,\text{mg}$. State how many low-dose tablets contain the same mass as one standard tablet.
Solve

Is the aspirin pure?

A drug must be pure. The crude aspirin from the reaction still contains impurities such as unreacted salicylic acid. Two things clean it up and check it: recrystallisation and melting point measurement.

Recrystallisation

  1. Dissolve the crude solid in the minimum amount of hot solvent (such as an ethanol–water mixture).

  2. Let the solution cool slowly. The aspirin is less soluble when cold, so pure crystals form.

  3. The impurities are present in small amounts, so they stay dissolved in the cold solvent.

  4. Filter the crystals with suction filtration, wash them with a little cold solvent and dry them.

Using too much solvent is the usual mistake. More of the aspirin stays dissolved and the yield drops.

Melting point as a test of purity

A pure solid melts sharply at one fixed temperature (pure aspirin melts at about $136\,^\circ\text{C}$). An impure solid melts below that temperature and over a wider range. The impurity particles disturb the regular crystal lattice, so it needs less energy to break down.

Testing for unreacted salicylic acid

Salicylic acid has a free phenolic –OH group. Aspirin does not, because that group has been turned into an ester. Add a few drops of iron(III) chloride solution to a solution of the sample:

  • purple (violet) colour means salicylic acid is present

  • no colour change (the solution stays yellow-orange from the iron(III) chloride) means no free phenol, so the aspirin is pure

Practice★★★Not started
A student prepares aspirin and tests its purity by measuring the melting point. Pure aspirin melts at about $136\,^{\circ}\text{C}$. The student's crude product melts…

A student prepares aspirin and tests its purity by measuring the melting point. Pure aspirin melts at about $136\,^{\circ}\text{C}$. The student's crude product melts over the range $118$–$126\,^{\circ}\text{C}$, and after recrystallisation it melts over $133$–$135\,^{\circ}\text{C}$.

  1. a) Explain why the crude product has a lower and broader melting range.
  2. b) Describe how recrystallisation purifies the product.
  3. c) Describe a chemical test using iron(III) chloride that would detect unreacted salicylic acid, and state what is observed.
  4. d) Explain why the melting range after recrystallisation still suggests that the sample may not be perfectly pure.
Solve

Penicillin and antibiotic resistance

In 1928 Alexander Fleming noticed that a Penicillium mould growing on a culture dish had killed the bacteria around it. Later, Florey and Chain purified the active compound, penicillin, and it became the first widely used antibiotic.

An antibiotic is a substance that kills bacteria or stops them growing. Antibiotics do not work against viruses, so they will not help with a cold or flu.

How does penicillin work?

Bacteria are surrounded by a strong cell wall, which stops them bursting. Penicillin stops the bacteria building new cell wall. The bacteria cannot repair or grow their wall, so they burst and die. Human cells have no cell wall, only a cell membrane, so penicillin does not harm them. This is called selective toxicity.

Antibiotic resistance

Any bacterial population contains some individuals that, by chance, survive an antibiotic. If the course is stopped early, or the antibiotic is used when it is not needed, the weakest bacteria die and the most resistant survive. They multiply and pass on their resistance, so the population becomes mostly resistant. This is natural selection.

Strategies to slow resistance include:

  • prescribing antibiotics only when they are needed

  • finishing the full course

  • better hygiene and vaccination, so there are fewer infections to treat

  • restricting routine antibiotic use in farming

  • research into new antibiotics

Practice★★★Not started
Penicillin acts by inhibiting the synthesis of bacterial cell walls. Resistance to antibiotics is a growing problem. a) Explain why penicillin is harmless to human cells…

Penicillin acts by inhibiting the synthesis of bacterial cell walls. Resistance to antibiotics is a growing problem.

  1. a) Explain why penicillin is harmless to human cells but harmful to bacteria.
  2. b) Explain how misuse of antibiotics, such as stopping a course early, promotes resistance.
  3. c) The table gives the percentage of bacterial isolates resistant to an antibiotic in a hospital over four years: 2019: 8%; 2020: 12%; 2021: 19%; 2022: 27%. Describe the trend and calculate the average yearly percentage-point increase.
  4. d) Discuss two strategies to address the problem of antibiotic resistance.
Solve

Taxol and the supply problem

Taxol (paclitaxel) is used in chemotherapy to treat cancers such as ovarian, breast and lung cancer. It was first isolated from the bark of the Pacific yew tree, and it stops cancer cells dividing.

The problem was supply. Removing the bark kills the tree, the trees grow slowly, and each tree gives only a small amount of drug. This is not sustainable: the species would be driven towards extinction long before enough drug was made.

Semi-synthesis

Chemists found a related compound in the needles of the European yew. The needles grow back, so the tree is not killed. This compound is a close relative of taxol. It is extracted and then converted to taxol in a few laboratory steps. A semi-synthesis starts from a natural compound with most of the structure already in place, and uses chemical reactions to finish the molecule. It solved the supply problem without destroying trees.

Ethical issues

Drug discovery from nature raises ethical questions:

  • Do companies share profit with the countries and local communities whose traditional knowledge led to the discovery?

  • Is it right to destroy a species to make a medicine?

  • Will poorer patients be able to afford the finished drug?

Practice★☆☆Not started
Penicillin and taxol are both drugs of natural origin. a) State the source of penicillin and its therapeutic use. b) State the source of taxol and its therapeutic use.…

Penicillin and taxol are both drugs of natural origin.

  1. a) State the source of penicillin and its therapeutic use.
  2. b) State the source of taxol and its therapeutic use.
  3. c) Explain what is meant by an antibiotic.
Solve
Practice★★☆Not started
Taxol (paclitaxel) was first extracted from the bark of the Pacific yew tree, which yields very little of the drug per tree. a) Suggest why harvesting from the bark is…

Taxol (paclitaxel) was first extracted from the bark of the Pacific yew tree, which yields very little of the drug per tree.

  1. a) Suggest why harvesting from the bark is not a sustainable source.
  2. b) Explain what is meant by semi-synthesis and how it solved the supply problem.
  3. c) Suppose $1.0\,\text{g}$ of taxol requires bark from three trees. Calculate the number of trees needed to treat 1,000 patients if each needs $2.5\,\text{g}$.
  4. d) State one ethical issue in drug discovery from natural sources.
Solve

Why modify natural products?

The drugs on this page follow the same pattern:

Five steps from a natural source to a tested drug: natural source, extract, isolate pure compound, modify structure, tested drug Natural source Extract Isolate pure compound Modify structure Tested drug

Why use a pure compound rather than a crude extract?

  • The dose can be controlled, because a plant's content of the active compound varies with the season, soil and variety.

  • Other compounds in the extract may be harmful or have unwanted side effects.

  • A pure compound can be made in large amounts and tested properly in clinical trials.

Why modify the structure? The natural compound is often a starting point, not the finished drug. Chemists change the structure to:

  • reduce side effects (salicylic acid to aspirin, which is gentler on the stomach)

  • make the drug more effective or longer lasting

  • make it easier or cheaper to make, or increase supply (taxol by semi-synthesis)

  • change how it is absorbed or how it dissolves

Why biodiversity matters. Only a small fraction of plant, fungal and marine species have been tested for medical activity. Every species lost could take with it a molecule that might have cured a disease. Protecting rainforests, oceans and other ecosystems is also a way of protecting future medicines. A species that gives a drug also needs to be harvested sustainably.

Practice★★★Not started
Evaluate the role of natural products in drug development, using willow bark to aspirin, cinchona to quinine and the Penicillium mould to penicillin. a) For each…

Evaluate the role of natural products in drug development, using willow bark to aspirin, cinchona to quinine and the Penicillium mould to penicillin.

  1. a) For each example, identify the active compound and the way the natural source was used.
  2. b) Explain why a pure, synthesised compound is preferred to a crude plant extract.
  3. c) Explain why chemists modify the structure of a natural product to make a drug.
  4. d) Discuss the importance of biodiversity to the discovery of future drugs.
Solve

Back to the start: willow bark gave us salicin and then salicylic acid. Chemists changed the –OH group to an ester to make aspirin, which is gentler on the stomach, can be made pure in a laboratory and can be dosed accurately. That change took a traditional remedy and made it a medicine.

Summary

  • A natural product is a compound made by a living organism. Examples are salicin (willow bark), quinine (cinchona), morphine (opium poppy), penicillin (Penicillium mould) and taxol (yew).

  • Aspirin (acetylsalicylic acid) has a carboxylic acid and an ester group. It is made from salicylic acid and ethanoic anhydride in a 1:1 mole ratio. It is used as an analgesic, antipyretic and anti-inflammatory, and in low doses to reduce blood clotting.

  • Percentage yield $= \frac{\text{actual}}{\text{theoretical}} \times 100$. A yield below $100\%$ is caused by incomplete reaction, losses and side reactions.

  • Purity is checked by melting point (impure means lower and broader) and by the iron(III) chloride test (purple means free phenol, so salicylic acid is present). Recrystallisation purifies the product.

  • Penicillin inhibits bacterial cell wall synthesis and is harmless to human cells, which have no wall. Misusing antibiotics selects for resistant bacteria.

  • Taxol was in short supply because it came from yew bark. Semi-synthesis from renewable yew needles solved the problem.

  • Chemists use pure compounds and modify natural products to control dose, reduce side effects and improve supply. Biodiversity is a source of future drugs and raises ethical questions about fair use.

See all the exercises in this section