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Prep 2 Tech · Biology I
Ecology and sustainability · Ecosystem dynamics

Matter Cycles

Before you start, make sure you know: The components of an ecosystem (Secondary Year 1)
Before you start, make sure you know: The causes of climate change (Secondary Year 1)

In Lake Xochimilco, the water you see green and cloudy today may have been clean a few years ago. The carbon in your breath today may have been part of a dinosaur millions of years ago. Unlike energy, which dissipates as heat and does not come back, the atoms of matter are not destroyed: they pass from living things to the atmosphere, the water, or the rocks, and return again and again. These journeys are the biogeochemical cycles.

Reservoirs, flows, and types of cycles

A mature forest stores tons of carbon in its trunks, but when the wood burns or decomposes, that mass disappears from view without the atoms having been destroyed. At every level of a food web, matter is conserved. Where is the planet's matter stored, and through what mechanisms does it travel from one place to another?

Landscape with atmosphere, forest, soil, ocean, and rocks: blue arrows show the gaseous flow of carbon and nitrogen through the atmosphere and green arrows show the sedimentary flow of phosphorus through soil, water, and sediments. living things atmosphere N₂ CO₂ gaseous · C, N soil flow ocean rocks and sediments sedimentary · P zones: reservoirs · arrows: flows
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Explain the difference between a gaseous and a sedimentary biogeochemical cycle, and classify the carbon, nitrogen, and phosphorus cycles into one of the two types,…

Explain the difference between a gaseous and a sedimentary biogeochemical cycle, and classify the carbon, nitrogen, and phosphorus cycles into one of the two types, justifying your choice.

Solve

The carbon cycle

Carbon atoms circulate from the atmosphere to plants through photosynthesis, pass through the food web, and return to the atmosphere. Photosynthetic organisms (plants, algae, and phytoplankton) are the entry point, and the cellular respiration of plants and animals is the exit.

In this diagram, the arrows labeled a, b, and c are processes you should be able to name, and the arrow with "?" is a flow that we humans add. Before continuing, try to identify them in your notebook.

Diagram of the carbon cycle with four labeled arrows: a and b connect the atmosphere with the producers in opposite directions, c carries carbon from the producers to the consumers, and an arrow with a question mark reaches the atmosphere from fossil fuels. The ocean exchanges CO₂ with the atmosphere. atmosphere (CO₂) ocean producers consumers soil and decomposers fossil fuels a b c ?

The ocean is also a reservoir

The ocean is the largest fast-exchange reservoir of carbon: $\text{CO}_2$ dissolves in surface water, phytoplankton fix it through photosynthesis, and part of the carbon sinks as organic remains or forms carbonate shells that accumulate in sediments. That is why the real cycle has three active reservoirs: biosphere, atmosphere, and oceans.

Reservoir Stored carbon (approx.)
Atmosphere 850 Gt
Terrestrial biosphere (plants and soil) about 2,000 to 3,000 Gt
Oceans more than 38,000 Gt

Calculating with reservoirs and flows

To know whether a flow is large or small, it is not enough to look at its value: you have to compare it with the reservoir it leaves or arrives at. Two useful calculations: the ratio between reservoirs and the residence time (reservoir ÷ outflow, that is, how long it takes to be renewed).

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Write the overall chemical equations for photosynthesis and aerobic cellular respiration, and explain the role both processes play, in opposite directions, within the…

Write the overall chemical equations for photosynthesis and aerobic cellular respiration, and explain the role both processes play, in opposite directions, within the carbon cycle.

Solve
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The diagram represents the main reservoirs and fluxes of the carbon cycle. Name the processes marked with the letters a, b, and c, indicate which process corresponds to…

The diagram represents the main reservoirs and fluxes of the carbon cycle. Name the processes marked with the letters a, b, and c, indicate which process corresponds to the arrow marked with '?', and explain how this flux alters the balance of the cycle.

ATMOSPHERE (CO₂) PRODUCERS CONSUMERS SOIL AND DECOMPOSERS FOSSIL FUELS a b c ?
Solve
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A science sceptic posts the following message: "The atmosphere contains about $850\text{ Gt}$ of carbon and the oceans more than $38\,000\text{ Gt}$. Our annual…

A science sceptic posts the following message: "The atmosphere contains about $850\text{ Gt}$ of carbon and the oceans more than $38\,000\text{ Gt}$. Our annual emissions from burning fossil fuels are barely around $10\text{ Gt}$. Since the planet's total carbon is constant and anthropogenic emissions are less than $0.03\,\%$ of the marine reservoir, it is absurd to claim that we can alter the global carbon cycle."

  1. a) Refute their argument by distinguishing between the dynamics of the biological (fast) cycle and the geological (slow) cycle: use the concepts of flux, residence time, and dynamic equilibrium to justify why $10\text{ Gt/year}$ destabilises the global climate.
  2. b) If natural sinks (biosphere and ocean surface) absorb on average $45\,\%$ of the anthropogenic carbon emitted each year, calculate how many ppm of $\text{CO}_2$ accumulate annually in the atmosphere, knowing that $1\text{ ppm} \approx 2.13\text{ Gt}$ of atmospheric carbon.
  3. c) Predict what will happen to the ocean's capacity to continue acting as a chemical sink for $\text{CO}_2$ as surface water temperature increases and its pH decreases, justifying through the chemical equilibrium of carbonic acid and carbonates.
Solve

The nitrogen cycle

The air you breathe contains 78% nitrogen, and yet many fields turn yellow if fertilizer is not added. Why is an element so abundant in the atmosphere inaccessible to plants, and how do they manage to take it in?

Diagram of the nitrogen cycle: N₂ from the air becomes ammonium through fixation, nitrate through nitrification, and organic matter through absorption; organic matter returns ammonium through ammonification, and nitrate returns N₂ to the air through denitrification. N₂ (air) ammonium NH₄⁺ nitrate NO₃⁻ organic matter fixation nitrification absorption denitrification ammonification
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Describe the role of nitrogen-fixing bacteria and nitrifying bacteria, indicating which chemical transformation each group performs and why they are essential for plant…

Describe the role of nitrogen-fixing bacteria and nitrifying bacteria, indicating which chemical transformation each group performs and why they are essential for plant nutrition.

Solve
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Order the following stages of the nitrogen cycle as they occur in an ecosystem and briefly describe what each consists of: nitrification, fixation, denitrification, and…

Order the following stages of the nitrogen cycle as they occur in an ecosystem and briefly describe what each consists of: nitrification, fixation, denitrification, and ammonification.

Solve

Phosphorus, a limiting nutrient

Phosphorus is a sedimentary cycle: it passes from rocks to soil, to living things, and to sediments, and it has almost no gas phase. That is why it is very slow and phosphorus tends to stay where it falls.

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Phosphorus is often the limiting nutrient in terrestrial ecosystems. Explain what it means for a nutrient to be 'limiting', why the phosphorus cycle is so slow, and what…

Phosphorus is often the limiting nutrient in terrestrial ecosystems. Explain what it means for a nutrient to be 'limiting', why the phosphorus cycle is so slow, and what consequence its lack of a gaseous phase has.

Solve

Eutrophication: when the cycles become unbalanced

After the neighboring fields are heavily fertilized, a canal of clean water becomes covered within a few days with water hyacinth and algae, and soon dead fish appear along the shore. How can a massive input of nutrients, which stimulates producers, end up wiping out aquatic fauna? It is a real case of ecological imbalance, like that of Xochimilco, some reservoirs, or the sargassum on Mexico's Caribbean coast.

Cross section of a eutrophic lagoon: above, fertilizer from a field reaches the water and algae cover the surface and block the light; below, the algae die and sink, decomposers use up the oxygen at the bottom, and the fish die. 1 Excess N and P no light O₂ 2 Algal bloom days later O₂ O₂ decomposers 3 Algae die 4 Anoxia → mortality
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An environmental monitoring team studies a coastal lagoon after an agricultural runoff discharge and records the following data: Day 5: Surface reactive phosphorus…

An environmental monitoring team studies a coastal lagoon after an agricultural runoff discharge and records the following data:

  • Day 5: Surface reactive phosphorus concentration of $0.8\text{ mg/L}$ and chlorophyll $a$ of $65\ \mu\text{g/L}$; dissolved $\text{O}_2$ saturation of $145\,\%$ at noon in the top $40\text{ cm}$ of depth.

  • Day 20: Surface $\text{O}_2$ saturation of $35\,\%$ at dawn; extreme turbidity ($40\text{ NTU}$); dissolved $\text{O}_2$ at the bottom ($3\text{ m}$) at $0.3\text{ mg/L}$, with the release of hydrogen sulfide ($\text{H}_2\text{S}$) and benthic fauna die-off.

A municipal technician states: "It is impossible for fish to die of asphyxiation if algae produce plenty of oxygen through photosynthesis; the cause must be direct chemical toxicity from nitrate."

  1. a) Refute the technician's claim using biogeochemical arguments: justify why a massive autotrophic bloom inevitably leads to hypolimnetic and nocturnal anoxia.
  2. b) Explain which trophic group proliferates from day 15 onwards and which anaerobic metabolic pathways account for the presence of $\text{H}_2\text{S}$ at the bottom.
  3. c) Predict what immediate ecological consequences treating the lagoon with a chemical algaecide to eradicate phytoplankton would have on the matter cycle.
Solve

Acid rain: sulfur and nitrogen in the air

The combustion of coal, fuel oil, and diesel releases sulfur dioxide ($\text{SO}_2$) and nitrogen oxides ($\text{NO}_x$) into the atmosphere, gases from the sulfur and nitrogen cycles. Why can two lakes that receive the same rain end up with one having no fish and the other untouched?

The watershed determines the damage: buffering capacity

What matters is not only the pH of the rain, but the rock it falls on. Limestone rocks ($\text{CaCO}_3$) neutralize the acid: $\text{CaCO}_3 + 2\,\text{H}^+ \rightarrow \text{Ca}^{2+} + \text{CO}_2 + \text{H}_2\text{O}$. That way the lake's pH barely changes. This is a good buffering capacity, like that of the Yucatán Peninsula, which is limestone rock. Granitic or volcanic rocks (like those of many high-mountain crater lakes) have almost no carbonates and do not buffer.

When the pH drops, the acid dissolves aluminum from minerals and soils, and releases $\text{Al}^{3+}$, which is toxic to fish (it damages their gills) and to amphibian eggs. In a limestone watershed the pH stays high and the aluminum remains insoluble.

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Two high-mountain lakes, located at equal distances from an industrial park with coal-fired power plants, receive continuous precipitation with an average pH of $4.1$.…

Two high-mountain lakes, located at equal distances from an industrial park with coal-fired power plants, receive continuous precipitation with an average pH of $4.1$. Biological and chemical monitoring reveals very contrasting data:

  • Lake A (situated on a granitic basin): Has lost its salmonid and amphibian populations; a dissolved $\text{Al}^{3+}$ concentration of $0.35\text{ mg/L}$ is detected in its waters.

  • Lake B (situated on a limestone basin): Keeps its fish richness intact and shows no detectable dissolved aluminum.

  1. a) Justify on a lithological and chemical scale why the same flux of acid rain causes a biological collapse in lake A but proves harmless in lake B.
  2. b) Explain the biogeochemical mechanism by which acidification of the surrounding soil mobilises toxic ions such as $\text{Al}^{3+}$ and leaches essential nutrients ($\text{Ca}^{2+}$, $\text{Mg}^{2+}$), and predict the impact of this phenomenon on the forest in basin A.
  3. c) To restore lake A, an association proposes periodically adding large volumes of slaked lime or calcium carbonate directly to the water. Argue the limitations and potential harmful effects of this measure compared to reducing $\text{SO}_2$ emissions at the source.
Solve

Back to the beginning: the carbon atom you exhale today could have belonged to a dinosaur because, when it died and decomposed, that carbon passed into the atmosphere as $\text{CO}_2$ or was trapped in sedimentary rocks; millions of years later, a plant or phytoplankton fixed it through photosynthesis and it reached you through the food web. And the cloudy water of a canal like those of Xochimilco reminds us that, if the cycles are overloaded, the balance breaks down.

Summary

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